2022
Towards comparable MRI: The role of open-source software and community data standards
In this educational, I present the currently available software tools and BIDS standard for quantitative MRI from a computer science …
Vendor-neutral sequences (VENUS) improve multicenter reproducibility of quantitative MRI
Winner of Reproducible Research and White Matter SG group 1st place awards and Summa Cum Laude in the Annual Meeting of ISMRM. The main …
It all starts with one letter, the same queue: When quality (QC) meets quantity (qMRI)
This is a love story between qMRI and QC. They came across while waiting at the infamously long queue of clinical translation. They …
2021
Sneak peek at the VENUS (vendor-neutral sequences) in a proprietary sky
Vendor-neutral sequences (VENUS) shines bright in a dark proprietary sky to shine some light on unifying qMRI pulse sequence …
On Modeling with Dimitri Novikov, Valerij Kiselev and Sune Jespersen
A special MRM Highlight feature that was a roundtable discussion between MRM Highlights contributor Agah Karakuzu and the authors of an …
Scientific computing with Python: From acoustic dissonance to magnetic resonance
Invited
My talk at the ISMRM WMSG business meeting about the meta-analysis of MRI biomarkers of myelin. Check out this interactive book to …
Interactive plots and the spectrum of data visualization
Invited x3
In this presentation, I tried to breakdown the components of a data visualization practice that facilitates the creation of …
Communicating Science Openly with Nikola Stikov
Invited
Nikola Stikov talks about the history and future of academic publishing and the need for transparency, and Agah Karakuzu gives a live …
2020
NeuroLibre: A sprout of living publications with Elizabeth DuPre
Invited
We describe how NeuroLibre can serve as a curated repository of interactive neuroscience notebooks that seamlessly integrate data, …
BrainHack Proceedings
Brainhack Proceedings is a community driven, free and open publication venue, that aims to host stories as the output of your Brainhack …
qMRI-BIDS: A BIDS extension for quantitative MRI
We present our work on an extension proposal for the BIDS format that allows researchers to efficiently describe and share multimodal …
Transparent workflows - From scanner to publication
Keynote Invited x3
In this keynote, I talk about open workflows, comparing them to a journey to the center of a multi-layered neuroimaging globe. Where …
Divide and Conquer m-scripts
Invited
I took a spaghetti script written in MATLAB and turned it into an understandable and reusable code living happily in a powerful GitHub …
Docker for MRI scientists
Invited
The arrival of Docker containers has revolutionized the way software is developed, tested and pushed to production. Billions of …
An interactive meta-analysis of MRI biomarkers of myelin
My talk at the ISMRM WMSG business meeting about the meta-analysis of MRI biomarkers of myelin. Check out this interactive book to …
2019
Docker containers made fun - Let it run!
Docker can run frozen environments inside lightweight boxes isolated from your host machine. When you have many containers running, it …
